Data Analysis (Per Hour)

Custom bioinformatics analysis from experimental design to publication.

Biostatistics (Per Hour)

Statistical analysis of bioinformatics data.

Software Architecture (Per Hour)

Building pipelines, writing code, and creating databases.

Expression Profiling Data Analysis (Per Sample)

RNA-Seq differential expression analysis for model organism (human, mouse), including QC of raw data, alignment to genome, and generation of tables of differentially expressed genes for typical two-factor experiment. Minimum 24 samples, up to 50.

Human Genome/Exome SNP Analysis (Per Sample)

Variant analysis starting from raw data to QC, then alignment, and finally, variant calling. Minimum 20, up to 50.

Human Genome/Exome Analysis plus Copy Number Variation (Per Sample)

Variant analysis starting from raw data to QC, then alignment, and finally, variant calling including CNVs. Minimum 20, up to 50.

RNA-Seq (Per Project)

RNA-Seq differential expression analysis for model organism (human, mouse), including QC of raw data, alignment to genome, and generation of tables of differentially expressed genes for typical two-factor experiment. For projects with 25 samples or more.

Basic Genome Assembly (Per Project)

Genome assembly for genome size < 4Gb. Data preprocessing, followed by de novo assembly, and polishing (using the same data type).

Hourly data analysis charges apply to custom data analyses, including setup of non-model organisms, proteomics and integrative omics analyses, single-cell RNASeq, custom visualizations, etc. Please contact us to arrange for a consultation and/or estimate of the cost of analyzing your data. We typically do not charge for initial consultations.

Authorship

We request co-authorship (and will assist with manuscript preparation) if we have developed novel tools, algorithms, or pipelines, participated in experiment design planning, or have contributed substantially to a biological question addressed in a manuscript (see ABRF’s Authorship Guidelines). We ask that, at minimum, you acknowledge us in a publication to which we have contributed routine analysis, data management or conversion, or data submission services.