From Bioinformatics Core

Complex Data Analysis

• Targeting data sets across a large biological spectrum from DNA, protein, to complex, family, system and population as well as dynamic features such as expression, simulation. The particular activities include data mining, statistics and functional and evolutionary analysis.
• Building Custom tool and database and special programming/algorithm support to facilitate data analysis.

Projects

• Large scale, novel, pipeline using 454 data to mine SNP's from the Macaque genome. SNP Pipeline
• Custom program designed to show gene expression and annotation overlayed on a circular representation of a bacterial genome. Circular Microarray

• Antibody family classification
• calculate protein family based on BLASTCLUST
• BASE (microarray database) .. quick start
• iProtein
• Motif Analysis of Solexa Data
• Finding motifs using sissrs.pl
• Popular IDs
• Arabidopsis arenosa whole genome assembly
• base-calling using phred, sequence trimming using lucy, t_coffee and blastclust
• Using TheGPM
• GBrowse
• Blast2Go
• blastpipe
• next generation (454/solexa) sequence assembly using velvet
• next generation (solexa/ABI) sequence alignment using maq
• 454 result files