(Jan 20, 2016) So you want to do a: RNAseq experiment, Differential Gene Expression Analysis

Posted by & filed under Training.

Jan. 20, 2016, 1 p.m. – Jan. 20, 2016, 3 p.m. The start of a series of new workshops discussing experimental approaches and concerns from sample to interpretation. The first in the series is RNAseq, specifically Differential Gene Expression Analysis.  The workshop is intended for those who are interested in and are in the planning… Read more »

UCSC Genome Browser Workshop, December 7-8, 2015

Posted by & filed under Training.

This workshop is co-hosted by the Bioinformatics Training Program and the Data Intensive Biology Training Program. Instructors: Dr. Robert Kuhn and Angie Hinrichs, UCSC   If you are a UC Davis School of Veterinary Medicine student or affiliate and would like to register, please contact Dr. C. Titus Brown (ctbrown@ucdavis.edu). Otherwise, click to register: Register… Read more »

Using Galaxy for Analysis of High Throughput Sequence Data, September 14-18, 2015

Posted by & filed under Training.

Waitlist What will be covered? This workshop covers modern high throughput sequencing technologies, applications, and ancillary topics, including: Illumina HiSeq / MiSeq, and PacBio RS technologies Read Quality Assessment & Improvement ChIP-Seq Analysis SNP and indel discovery RNA-Seq differential expression analysis Experimental design Genome assembly Hardware and software considerations Cloud Computing We will present a… Read more »

Using the Linux Command Line for Analysis of High Throughput Sequence Data, June 15-19, 2015

Posted by & filed under Training.

Register What will be covered? This workshop covers modern high throughput sequencing technologies, applications, and ancillary topics, including: Illumina HiSeq / MiSeq, and PacBio RS technologies Read Quality Assessment & Improvement Genome assembly SNP and indel discovery RNA-Seq differential expression analysis Experimental design Hardware and software considerations Cloud Computing We will present a rich collection… Read more »

2015 Bioinformatics Training Schedule Announced

Posted by & filed under Training.

The Bioinformatics Core is pleased to announce three training opportunities which will be held at UC Davis in 2015: March 23-26: RNA-Seq and ChIP-Seq Analysis with Galaxy June 15-19: Using the Linux Command Line for Analysis of High Throughput Sequence Data September 14-18: Using Galaxy for Analysis of High Throughput Sequence Data Registration is now… Read more »

RNA-Seq and ChIP-Seq Analysis with Galaxy, March 23-26, 2015

Posted by & filed under Training.

What will be covered? … This workshop will focus on the design and analysis of two powerful experimental paradigms: RNA-Seq for expression profiling, and ChIP-Seq to assess genomic DNA binding sites. We will use Illumina data for hands-on exercises, and perform analyses using the popular Galaxy platform (http://usegalaxy.org) running on the Amazon Cloud (http://aws.amazon.com/). What… Read more »

RNA-Seq and ChIP-Seq Analysis with Galaxy, December 16-19, 2014

Posted by & filed under Training.

What will be covered? … This workshop will focus on the design and analysis of two powerful experimental paradigms: RNA-Seq for expression profiling, and ChIP-Seq to assess genomic DNA binding sites. We will use Illumina data for hands-on exercises, and perform analyses using the popular Galaxy platform (http://usegalaxy.org) running on the Amazon Cloud (http://aws.amazon.com/). What… Read more »

Using the Linux Command Line for Analysis of High Throughput Sequence Data, September 15-19, 2014

Posted by & filed under Training.

This new workshop covers modern high throughput sequencing technologies, applications, and ancillary topics, including: Illumina HiSeq / MiSeq, and PacBio RS technologies Read Quality Assessment & Improvement Genome assembly SNP and indel discovery RNA-Seq differential expression analysis Experimental design Hardware and software considerations Cloud Computing The course includes a rich collection of lectures and hands-on… Read more »

Using Galaxy for Analysis of High Throughput Sequence Data, June 16-20, 2014

Posted by & filed under Training.

This workshop will cover modern high throughput sequencing technologies, applications, and ancillary topics, including: Illumina HiSeq / MiSeq, and PacBio RS technologies Read Quality Assessment & Improvement Genome assembly SNP and indel discovery RNA-Seq differential expression analysis Experimental design Hardware and software considerations Cloud Computing The course includes a rich collection of lectures and hands-on… Read more »