Microbial Community Analysis, March 21-23, 2016

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Registration is now open for our new Microbial Community Analysis workshop, which will cover amplicon community profiling, as well shotgun metagenomics/transcriptomics. With high-throughput sequencing (HTS) of entire microbial communities we are rapidly advancing our understanding of the composition and functional content of microbial communities involved in climate change, environmental pollution, human health, biotechnology, etc. Using… Read more »

2016 Bioinformatics Training Program Preview

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We are planning 3-4 workshops this year including: March 21-24: Using Command-Line for Analysis of Community Profiling/Metagenomics Experiments (More info and registration announcement coming soon!) June 13-17: Using Galaxy For Analysis of High Throughput Sequence Data* Aug 29-Sept 2:  Using Galaxy For Analysis of High Throughput Sequence Data* December TBA:  Using Command-Line for Analysis of… Read more »

(Jan 20, 2016) So you want to do a: RNAseq experiment, Differential Gene Expression Analysis

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Jan. 20, 2016, 1 p.m. – Jan. 20, 2016, 3 p.m. The start of a series of new workshops discussing experimental approaches and concerns from sample to interpretation. The first in the series is RNAseq, specifically Differential Gene Expression Analysis.  The workshop is intended for those who are interested in and are in the planning… Read more »

UCSC Genome Browser Workshop, December 7-8, 2015

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This workshop is co-hosted by the Bioinformatics Training Program and the Data Intensive Biology Training Program. Instructors: Dr. Robert Kuhn and Angie Hinrichs, UCSC   If you are a UC Davis School of Veterinary Medicine student or affiliate and would like to register, please contact Dr. C. Titus Brown (ctbrown@ucdavis.edu). Otherwise, click to register: Register… Read more »

Using Galaxy for Analysis of High Throughput Sequence Data, September 14-18, 2015

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Waitlist What will be covered? This workshop covers modern high throughput sequencing technologies, applications, and ancillary topics, including: Illumina HiSeq / MiSeq, and PacBio RS technologies Read Quality Assessment & Improvement ChIP-Seq Analysis SNP and indel discovery RNA-Seq differential expression analysis Experimental design Genome assembly Hardware and software considerations Cloud Computing We will present a… Read more »

Using the Linux Command Line for Analysis of High Throughput Sequence Data, June 15-19, 2015

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Register What will be covered? This workshop covers modern high throughput sequencing technologies, applications, and ancillary topics, including: Illumina HiSeq / MiSeq, and PacBio RS technologies Read Quality Assessment & Improvement Genome assembly SNP and indel discovery RNA-Seq differential expression analysis Experimental design Hardware and software considerations Cloud Computing We will present a rich collection… Read more »